Systematic conservation planning at a crossroads 3.3.67

Tracks
Riverbank Rooms 6 & 7
Wednesday, November 26, 2025
3:30 PM - 5:30 PM
Riverbank Rooms 6 & 7

Speaker

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Dr Julian Beaman
Research Associate
Flinders University

Simulating success: applying forward-projection models of genetic rescue to bolster species resilience

3:30 PM - 3:45 PM

Abstract document

Many threatened species only persist as small and isolated populations where mutually reinforcing genetic and demographic threats increase the risk of extinction. The successful conservation of species distributed across fragmented habitats might require, in addition to the protection and restoration of habitats, the deliberate displacement (translocation) of individuals from genetically differentiated populations to increase the genetic diversity and fitness of target populations, a process known as ‘genetic rescue’. However, designing genetic-rescue interventions (determining optimal size, frequency, and source of translocated populations) to maximise success is inherently uncertain. We report a new simulation study using a recently developed theoretical model (Beaman et al. Evol App 18, 2025) that replicates the mutually reinforcing interaction between demographic and genetic effects that increase extinction probability in small populations. We simulated a set of translocation scenarios that confront decision makers during the implementation of genetic rescue, including abundance and effective population size of source and target populations, number of individuals translocated and how frequently, population genetic metrics of diversity and differentiation, and the demographic composition (age-structure, sex-ratio) of the translocated cohort. We report the relative importance of these genetic-rescue variables based on their effects on reducing extinction risk and increasing the mean time to extinction for focal populations. We also highlight the potential for forward-projection simulations to increase the cost-effectiveness of conservation interventions and contribute to systematic conservation planning, evaluation, and monitoring.

Biography

Julian is a Research Associate in the College of Science & Engineering at Flinders University with research training at the University of Sydney (Honours, 2011), The University of Queensland (PhD, 2019), and Monash University (Research Officer, 2020). His research seeks to understand how ecological and evolutionary processes interact to determine how animals respond to changing environments. At Flinders, Julian is part of an interdisciplinary team with expertise in behavioural ecology, genomics, conservation, and computational modelling working to develop predictive models of genetic rescue of inbred koala populations. Julian is the co-lead of the South Australian node of the CSIRO's National Koala Monitoring Program and a co-founder of the recently established not-for-profit The Koala Sanctuary on Kangaroo Island.
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Dr Andrew Colefax
Principal Conservation Officer
Department Of Environment, Tourism, Science & Innovation

Threatened species trajectories from challenging data with a Bayesian state-space framework

3:45 PM - 4:00 PM

Abstract document

Tracking population trends of threatened species is critical for conservation assessments, recovery planning, and biodiversity indices. However, threatened species data is often sparse, inconsistently sampled, and involves multiple sampling methods. Common approaches such as the chain method and generalised additive models that underpin biodiversity frameworks often fail or produce spurious trends when sites are unevenly sampled or lack temporal overlap.
To improve tracking and reporting of threatened species by the Queensland Threatened Species Unit, we developed a species-agnostic Bayesian state-space framework integrating disparate monitoring datasets while overcoming these limitations. In the framework, effort-scaled observations are modelled using zero-inflated lognormal likelihood, where zero-inflation probability is estimated hierarchically at the site level and automatically collapses to standard lognormal when zeros comprise less than 15%. It employs three-level nested random effects (location > site > sampling unit) that activate conditionally based on data structure, to allow model complexity to scale when required. The model uses a ‘time-aware’ first-order random walk with drift for the latent log-abundance to accommodate irregular sampling intervals and data gaps. The framework was implemented in NIMBLE with adaptive MCMC tuning and comprehensive convergence diagnostics.
This state-space modelling approach was applied to ten threatened Queensland vertebrates using Threatened Species Index and Threatened Species Operations data. Species datasets spanned diverse taxa, sampling methods, and spatiotemporal representation. Posterior predictive checks revealed good model fit across species, with diagnostics summarised into trajectory plot indices for public reporting. The framework successfully avoided artificial population spikes from site changes or uneven sampling effort, while credible intervals widened appropriately during data gaps, highlighting genuine uncertainty rather than false precision. This state-space modelling framework demonstrates improved population trajectory tracking with unified methodology, providing robust foundations for conservation assessments and biodiversity indices.

Biography

Dr. Andrew Colefax is a multidisciplinary Research Scientist, grounded in quantitative ecology, and with a focus on innovative and scalable technology-based methods for ecological monitoring. Andrew has expertise in drone-based wildlife monitoring, sensor integration and data pipelines, customised deep-learning algorithms, and statistical modelling. In his current role as Principal Conservation Officer with DETSI, he is developing monitoring frameworks using drones, camera traps, and acoustic receivers to track threatened and threatening species. This work aims to create scalable methods for monitoring the distribution and abundance of multiple species, supporting informed conservation decisions. Andrew seeks to innovate at the intersection of ecological research and practical conservation, enhancing biodiversity monitoring and management through advanced quantitative techniques and meaningful stakeholder engagement. His recent projects include developing robust Bayesian state-space modelling frameworks to derive population trajectories of threatened species from sparse and inconsistent datasets, assisting in species conservation prioritisation and evaluating the effectiveness of conservation efforts species recovery actions.
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Dr Cath Dickson
Science manager
Tasmanian Land Conservancy

Enhancing decision making tools to support private land conservation in Tasmania

4:00 PM - 4:05 PM

Biography

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Mr Nicholas Carpenter
Student
Monash University

Using the Green Status of Ecosystems to measure Australian alpine peatland recovery

4:05 PM - 4:20 PM

Abstract document

As global biodiversity rapidly plummets, it is important to consider holistic methods for understanding and reversing such declines. The Green Status of Ecosystems (GSE) is an emerging framework for measuring and assessing the recovery of entire ecosystem types. We sought to test the GSE method via a case study of the Australian Alpine Sphagnum Bog and Associated Fen ecosystem. We used expert input alongside historical and current data to assess the integrity of alpine peatlands across their distribution, generating an Ecosystem Recovery Category to reflect their present state. We used structured expert elicitation to understand the recovery status of this ecosystem across a range of conservation scenarios in the past, present and future. From these scenarios, we calculated five Conservation Impact Metrics to measure the importance of conservation in influencing the integrity of alpine peatlands, and their potential for short- and long-term recovery. The outputs from a GSE assessment provide easily communicable insights into the overall state of alpine peatlands that can be used to incentivise and inform conservation management, monitoring designs, and policy reporting. Formally measuring the state of ecosystem recovery using a standardised approach is essential for progressing towards the Global Biodiversity Framework’s targets and goals.

Biography

Nicholas Carpenter is an ecology Honours student working in the Conservation Outcomes & Decisions Lab at Monash University. He completed a Bachelor of Science (Ecology & Conservation Biology) and Bachelor of Arts (Philosophy) at the start of 2025. Nick has since intensified his focus on ecological conservation under the tutelage of Dr Jessica Walsh and Dr Jessica Rowland, the Co-Chairs of the IUCN Green Status of Ecosystems Taskforce. Together, the trio have tested and modified the emerging Green Status of Ecosystems framework, a method for assessing the recovery state and conservation potential of entire ecosystems. Nick’s focus has been on Australian alpine peatlands, a threatened ecosystem with significant contributions to key ecosystem services, like carbon sequestration and water filtration. Coordinating a group of alpine experts, Nick has assessed the recovery state and potential of this ecosystem, with implications for local conservation management, monitoring design and policy reporting. Nick has also collaborated with Dr Molly Grace, Co-Chair of the IUCN Green Status of Species, to explore the synergies and incompatibilities of the two Green Status frameworks, providing insight into the interactions between different levels of biodiversity. Nick aims to continue exploring his interest in ecosystem- and species-level recovery through further study.
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Dr Heidi Zimmer
Research Scientist
Centre for Australian National Biodiversity Research

Traditional Knowledge and biodiversity assessments: Indigenous-led/co-designed fungi and orchid research in Kakadu

4:20 PM - 4:35 PM

Abstract document

The Bininj/Mungguy have lived in Kakadu for over 65,000 years and hold deep knowledge of the region’s biodiversity. Kakadu National Park is recognised as a World Heritage site because of its cultural and natural values. Much of the publicly accessible information on Kakadu’s natural values is based on Balanda (non-Indigenous) research.
This presentation shares our journey so far, to centre Bininj/Mungguy leadership in a biodiversity project focused on orchids and fungi. Through a co-designed and Indigenous-led approach, the project has navigated complex pathways, involving permits, ethics approvals, Free Prior and Informed Consent, Indigenous Cultural Intellectual Property (ICIP), project Intellectual Property (IP), and Indigenous Data Sovereignty. We will reflect on how the project has grown beyond its original scientific scope, shaped by on-Country guidance and community priorities. This is not just a study of plants and fungi, it is a story about relationships, respect, reciprocity, and restoring authority to Traditional Owners in biodiversity research.
By sharing our experiences, we aim to support others to shift the research landscape toward approaches that are genuinely collaborative, ethical, and grounded in Indigenous governance.

Biography

Sherie Bruce is an Aboriginal scientist and PhD candidate at the University of Queensland whose work spans ethnomycology, conservation, and food biotechnology. Born and raised across the NT, she is deeply connected to Arrernte and Yolŋu Country. Her research integrates Indigenous knowledge and laboratory science to reawaken Aboriginal mushroom knowledge and advance sustainable bushfood and biotech initiatives that prioritise Indigenous ownership. Dr Heidi Zimmer is an ecologist with the Australian National Herbarium specialising in plant ecology, taxonomy and conservation. Together, they lead an Indigenous-led biodiversity project in Kakadu that unites Aboriginal and Western science to study fungi and orchids.
Jason Higham
Manager, Conservation And Threatened Species
Department for Environment and Water

Synthesis Discussion - Systematic conservation planning at a crossroads

4:35 PM - 5:30 PM

Biography


Session Chair

Jason Higham
Manager, Conservation And Threatened Species
Department for Environment and Water

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